| BioMolecular Engineering Research Center |
| BMERC: Computational Biology, structure prediction, functional profiles, and genome analysis. |
| http://bmerc-www.bu.edu/index.html |
| Tools and methods for computational biology. Working on secondary protein structure prediction, prov iding reliable profiles, and developing new ways to study molecular biology through bioinformatics. |
| BioMolecular Engineering Research Center, specializing in Bioinformatics research, protein functiona l profiles, protein structure prediction, genome analysis and visualisations, and promoter analysis. |
| bioinformatics, Boston University, Massachusetts, protein analysis, proteomics, sequence, structure, computational biology, genetics, evolution, phylogeny, prediction, motifs, WD repeat, peptide, nucl eotide, biochemistry, identification, pattern alignment, homology, blast, Smith-Waterman |
| search, option, boston, cummington, profiles, genome, functional, prediction, computational, biology , structure, analysis, ribosomal, history, projects, protein, evolution, search |
bu.edu - rank der domain 8169 (3097 in US)
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| Entrez Browser |
| Entrez cross-database search |
| http://www.ncbi.nlm.nih.gov/Entrez/ |
| Retrieves molecular biology data and bibliographic citations from the NCBI's integrated databases. |
| Simultaneously search multiple life sciences databases at the National Center for Biotechnology Info rmation (NCBI). |
| NCBI, National Center for Biotechnology Information, entrez, cross-database, search, engine, query, GQuery, Global Query, pubmed, pubmed central, journals, books, sequence, nucleotide, protein, omim, human, genome, gene, geo, gene-expression, taxonomy, snp, structure, domains, cdd, 3d-domains, sts, unigene, popset, medical, literature, life sciences |
| family, decoration, verdana, normal, weight, 666666, helvetica, database, database, document, varian t, entrez, normalres, information, helplayer, 336699, chemical, pubchem, search, active, pubmed, vis ited, databases, search, sequence, genbank, online, genome, structure, journals, expression, bioacti vity, substances, detailed, sequences, genome, structures, getelementbyid, 6c7f9a, 4e7531, thetitle, underline, 656a0d, messagebox, chromosomes, bioassay, cytogenetic, journals, nervous, gensat, scree ns |
nih.gov - rank der domain 376 (174 in US)
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| zum Seitenanfang ↑ |
| Geneva Bioinformatics (GeneBio) S.A. |
| GeneBio : Bioinformatics Solutions for the Life Sciences Community |
| http://www.genebio.com/ |
| GeneBio provides proteomics software tools and databases including SWISS-PROT, PROSITE, SWISS-2DPAGE and Melanie. We also offer a secure version of ExPASy molecular biology web server. |
| Bioinformatics solutions for the life sciences community.
Products : Phenyx, SmileMS, Melanie, Pro site, Swiss2Dpages, Aldente, Modiro |
| 2d, gel, analysis, software,MS-MS, protein identification,MS,small molecule,identification, proteomi cs,bioinformatics,2D, electrophoresis,1D,DIGE,mass spectrometry,spot picking,databases, phenyx,melan ie,aldente,modiro,smilems,tools |
| genebio, bioinformatics, events, phenyx, smilems, protein, molecules, partners, software, proteomics , community, scientific, geneva, sciences, javascript, solutions, javascriptkit, screening, sitemap, disclaimer, innovative, analysis, databases, comprehensive, presence, excellence, recognized, marke t, molecule, creative, annotated, solution, latest, noordwijkerhout, rounded, upcoming, netherlands, conference, european, anaheim, california, omicshub, enhance, forensic, reserved, rights, collabora te, databases, germany, toxicology, rounded |
| (SLD : genebio.com) |
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| zum Seitenanfang ↑ |
| Science/Biology/Bioinformatics/Online_Services |
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| Science/Biology/Bioinformatics/Online_Services |
| zum Seitenanfang ↑ |
| Transterm |
| Transterm 2008 |
| http://uther.otago.ac.nz/Transterm.html |
| Interactive database of mRNA regions and motifs from all species and genomes. Users can browse the p re-computed data tables, search the sequence databases or search their own sequences. |
| |
| Transterm user sequence search |
| document, getelementbyid, function, sequence, return, arglist, element, format, patterns, sequences, region, elements, pattern, xmlhttpreq, regulatory, window, length, species, search, buttonunclick, redundant, database, species, display, available, responses, transterm, options, select, arguments, string, search, header, example, escape, postserver2, response, patterns, firstchild, drawbuttonclic k, seqregion, flanking, fontweight, valuestr, category, initiation, defined, keynum, dataitems, colo urred, browse |
| (SLD : ac.nz) |
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| zum Seitenanfang ↑ |
| INCBI Irish National Centre for BioInformatics |
| Smurfit Institute - Genetics - Trinity College Dublin |
| http://acer.gen.tcd.ie/ |
| Hosts Irish embnet node, Gives links to Database browsing and interrogation at SRS, European (EBI) s ervers, Blast server for parasite genomes (EBI), US (NCBI) servers, Protein structure prediction, Pr edictProtein Server in Heidelberg, Gene identification, splice sites, exons, introns and a list of g ene structure prediction programs |
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| college, dublin, trinity, genetics, smurfit, institute |
tcd.ie - rank der domain 34522 (50 in IE)
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| Searching GenBank |
| Searching GenBank |
| http://www.ncbi.nlm.nih.gov/Genbank/GenbankSearch.html |
| Text and similarity searching, provided by the National Center for Biotechnology Information (NCBI). |
| GenBank is a database of nucleotide sequences. |
| GenBank, search, NCBI, National Library of Medicine, NLM,
National Institutes of Health, NIH, dat abase, |
| genbank, searching, databases, database, entrez, sequence, corenucleotide, nucleotide, records, netw ork, similarity, pubmed, numerous, information, including, division, multiple, applications, server, client, updates, release, access, information, genome, tagged, revised, survey, november, sequences , include, expressed, genomes, structures, medline, popset, queries, divisions, proteins, nucleotide s, structure, taxonomy, browser, search, separate, located, algorithms, independently, searched, dat abase, specified |
nih.gov - rank der domain 376 (174 in US)
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| Sequence Analysis (Bielefeld University Bioinformatics Server) |
| BiBiServ Sequence Analysis Department |
| http://bibiserv.techfak.uni-bielefeld.de/intro/seqdept.html |
| Collection of sequence analysis tools. |
| |
| |
| alignment, sequence, sequence, sequences, department, alignments, protein, algorithm, alignment, ana lysis, target, method, multiple, software, bibiserv, multiple, structure, analyse, segment, predict, splitstree, reputer, related, program, computes, optimal, structures, genefisher, dialign, secondar y, dynamic, family, parnass, prediction, movies, reverse, secondary, complemented, primers, programm ing, divide, available, comparison, developed, conquer, alternative, duplication, without, sequencin g, microorganisms, construction |
uni-bielefeld.de - rank der domain 29560 (1498 in DE)
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| NIH BioInformatics and Molecular Analysis Section |
| BIMAS Home Page |
| http://bimas.dcrt.nih.gov |
| Numerous computational tools and resources to unite advances in biology with those in computers, inf ormatics, and networking for the genomic and genetic analysis fields of BioInformatics; division of the Computational Bioscience and Engineering Lab at the Center for Information Technology. |
| |
| |
| molecular, analysis, genecards, privacy, please, policy, building, comments, bethesda, webmaster, fr iday, updated, suggestions, bioinformatics, institute, weizmann, leukemia, profiling, lymphoma, mirr or, mission, statement, project, miscellaneous, resources, section, biology, analyses, accessible, g enetic, linkage, information |
nih.gov - rank der domain 376 (174 in US)
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| zum Seitenanfang ↑ |
| Science/Biology/Bioinformatics/Online_Services |
|
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| Science/Biology/Bioinformatics/Online_Services |
| zum Seitenanfang ↑ |
| PIR-International Protein Sequence Database |
| Welcome to PIR [Protein Information Resource] |
| http://pir.georgetown.edu |
| Produces a non-redundant annotated protein sequence database. PIR features integrated annotation sea rch to support functional/structural genomics and proteomic research. |
| |
| |
| decoration, protein, protein, underline, search, pagetracker, uniprotkb, sample, report, resource, s upport, download, databases, information, document, uniparc, 336699, gajshost, mapping, university, mining, analysis, database, medical, search, peptide, whitehaven, center, georgetown, street, innova tion, delaware, newark, javascript, analytics, script, welcome, initdata, trackpageview, 4232355, ge ttracker, google, biblio, washington, location, unescape, 3cscript, protocol, source, retrieval, uni versal |
georgetown.edu - rank der domain 16248 (6023 in US)
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| zum Seitenanfang ↑ |
| Genepop on the Web |
| |
| http://wbiomed.curtin.edu.au/genepop/ |
| Online version of the program for populational genetics. |
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curtin.edu.au - rank der domain 35421 (204 in AU)
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| zum Seitenanfang ↑ |
| SA National Bioinformatics Institute |
| South African National Bioinformatics Institute - SANBI - Bioinformatics, Bioinformatic Studies |
| http://www.sanbi.ac.za/ |
| SANBI aims to bring genome information, computational biology, and analytical tools to the South Afr ican research community. Hosts SA National EMBNet Node, provides links to Sequence Retrieval System (SRS), GeneKraal, and TB Genomes Analysis Server. Research in Sequence Tag Alignment and Consensus K nowledgebase (STACK). Databases include BLAST search in Mycobacterium genome. |
| The South African National Bioinformatics Institute Institute delivers biomedical discovery appropri ate to both international and African context. Researchers at SANBI perform the highest level of res earch and provide excellence in education. |
| bioinformatics,informatics,cancer,genome,biology,science,south,african,national,bioinformatics,sanbi ,dna,bio |
| bioinformatics, courses, workshop, course, faculty, instructions, kamanu, graduate, opportunities, t raining, honors, introduction, genomics, african, research, students, training, seoighe, recent, tra cey, tsotetsi, samuel, masters, mclaughlin, kibler, matthews, technical, system, firdous, direko, or eetseng, moncho, mmakamohelo, mushal, jalali, administrators, cloete, wambui, kruger, gabere, alecia , pretorius, maqungo, monique, murungi, wamalwa, ashley, oliver, essack, magbubah, frederick |
| (SLD : ac.za) |
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| Molecular Informatics Resource for the Analysis of Gene Expression |
| Molecular Informatics Resource for the Analysis of Gene Expression |
| http://www.ifti.org/ |
| Information methodologies, tools, and technologies relating to the study of gene expression and sign al transduction from the Institute for Transcriptional Informatics. |
| |
| gene expression, transcription factors, molecular biology, gene regulation, transcription factors da tabase |
| document, gajshost, frames, pagetracker, molecular, gettracker, 8584332, trackpageview, enabled, bro wer, browser, support, please, informatics, unescape, 3cscript, protocol, analysis, location, google , javascript, script, resource, analytics, expression |
| (SLD : ifti.org) |
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| Center Structural Biology: Programs and Tools |
| Richards Center at Yale University |
| http://www.csb.yale.edu/ |
| User guides and worked examples for software applications in structural and molecular biology - from Yale Univ. |
| |
| |
| richards, userguides, university, center, applications, coordinates, sequences, analysis, general, s earch, information, contents, journals, webmaster, predict, movies, pictures, analyze, related, memo riam, slides, contact, modified, monday, frederic, graphics, groups, databases, homepages, listing, alphabetical, policies, people, modeling, bioinformatics, molecular, crystallography, electrostatics , packing, dynamics, minimization, surfaces, geometry, display |
yale.edu - rank der domain 4799 (1793 in US)
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| zum Seitenanfang ↑ |
| Biomolecular Interaction Network Database (BIND) |
| BOND Web Portal |
| http://bind.ca |
| BIND is a database designed to store full descriptions of interactions, molecular complexes and path ways. |
| |
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| registered, cookies, password, account, server, tsuicf0004, requires, forgot, password, register, re quired, 491503, urchintracker, portal, remote, access |
| (SLD : bind.ca) |
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| zum Seitenanfang ↑ |
| PEDANT |
| Pedant3 Databases |
| http://pedant.gsf.de/ |
| Completely automatic and exhaustive analysis of protein sequence sets - from individual sequences to complete genomes |
| IBI, mips, Bioinformatics |
| IBI, mips, Bioinformatics |
| refseq, releasegtfrancisella, tularensis, burnetii, releasegtcoxiella, holarctica, genomes, against, philomiragia, novicida, pedant, protein, available, searches, similarity, database, genomes, databa ses, webservice, computed, funcat, domains, regions, eukaryota, pedant, bacteria, analysis, archaea, protein, metazoa, sequences, plants, pedant, viruses, releasegtaspergillus, nidulans, capsulatus, n amegt, genome, project, taxonomy, abbreviations, ajellomyces, organism, months, analysed, display, s tarting, recent, recently, metazoa |
| (SLD : gsf.de) |
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| CUBIC: Columbia University Bioinformatics Center |
| ROSTLAB - Welcome |
| http://cubic.bioc.columbia.edu/ |
| Features PredictProtein service for sequence analysis and protein structure prediction, META for sin gle-page interface to validated sequence analysis, PredictNLS for prediction and analysis of nuclear localization signals, EVA for evaluation of automatic protein structure prediction servers, and DSS Pcont for continuous assignment of protein secondary structure. |
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| bioinformatics,computational biology,protein,secondary structure,protein function,subcellular locali zation,prediction tools,function prediction,solvent accessibility,signal peptides,sorting signals,ge nomes,threading, redundancy reduction, nuclear localization signals,nls prediction,transmembrane bet a-barrels,domains,protein name identification,predictions for Entire Proteomes |
| 336699, sidebartitle, location, e1e8f0, background, function, border, buttontext, padding, protein, 013283032549981376961, 99bbcc, visited, ir3ui3z2jxm, getelementbyid, structure, document, selobj, go ogle, information, significant, sequences, bottom, research, onload, selindex, resources, window, pa getype, sectionid, parent, project, research, improve, showtoc, continue, previous, prefer, layout, driven, rostlab, before2008, support, without, available, material, structural, efficiency, genomics , projects, determine |
columbia.edu - rank der domain 3642 (1385 in US)
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| Molecular Interactions Database (MINT) |
| MINT a Molecular INTeractions database |
| http://cbm.bio.uniroma2.it/mint/ |
| MINT is a database designed to store functional interactions between biological molecules (proteins, RNA, DNA). |
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| database, redirecting, interactions, molecular |
uniroma2.it - rank der domain 35763 (564 in IT)
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| zum Seitenanfang ↑ |
| Scansite |
| Scansite Menu |
| http://scansite.mit.edu/ |
| Scansite searches for motifs within proteins that are likely to be phosphorylated by specific protei n kinases or bind to domains such as SH2 domains, 14-3-3 domains or PDZ domains. |
| |
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| scansite, search, sequence, color2, color1, trembl, databases, protein, research, databases, visited , institute, domains, active, october, decoration, calculate, update, protein, utilities, features, common, expression, patterns, motifs, regular, pattern, proteins, simultaneously, accession, number, database, method, matrix, multiple, referencing, konqueror, internet, explorer, safari, galeon, fir efox, mozilla, netscape, problems, contact, obenauer, questions, comments, encouraged, alternative |
mit.edu - rank der domain 1198 (505 in US)
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| zum Seitenanfang ↑ |
| Verbumculus Genetic Sequence Analyzer |
| Verbumculus Sequence Analyzer |
| http://www.cs.ucr.edu/~stelo/Verbumculus/ |
| An interesting tool to discover and visualize over- or under-represented words in genetic sequences. Requires Java support in browser. Also available as a downloadable program. |
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| server, frequencies, scores, sequences, perhaps, suffix, sequence, automaton, behaviors, unexpected, objective, detector, collective, values, warrant, maintanance, server, enough, suspicious, filter, preliminary, annotating, further, scrutiny, accurate, discrepancy, applications, diverse, studied, r ather, biology, molecular, computational, extensively, ubiquitously, arises, introduction, analyzer, sequence, verbumculus, problem, characterizing, represented, detecting, variances, expected, observ ed, significance, thereof, global, instead |
ucr.edu - rank der domain 10259 (3856 in US)
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| IBM Bioinformatics Group - Tools & Content |
| IBM Computational Biology Center / TEIRESIAS: Sequence Pattern Discovery |
| http://cbcsrv.watson.ibm.com/Tspd.html |
| Several genomics and proteomics tools, including multiple alignments, gene expression analysis, tand em repeat and motif discovery. |
| |
| ibm,international business machines,bioinformatics,pattern discovery,association discovery,pattern d iscovery tools,data mining,data mining tools,biological data mining,association discovery tools,bioi nformatics tools,sequence pattern discovery,motif discovery,pattern recognition,pattern detection,mo tif recognition,motif detection,motif discovery,protein annotation,protein function prediction,funct ional annotation,structural annotation,integer pattern discovery,g-protein coupled receptors,genome annotation, genome annotations,text mining,gene identification,gene discovery,gene finding,gene reco gnition,multiple sequence alignment, teiresias,musca,gene expression analysis,bio-dictionary,BDGF,Co mma,molecular moment analyis,dna repeat,functional genomics,proteomics,computational biology |
| discovery, biology, document, pattern, computational, center, characters, sequence, floratos, select , javascript, sequences, rigoutsos, teiresias, return, sampletoy, setzurich, netscape, sethemoglobin , nucleic, remove, overlaps, version, sensitive, accept, conference, molecular, international, annua l, recomb, addallhandlers, thisform, proceedings, enumeration, algorithm, biological, references, co mbinatorial, bioinformatics, alignment, without, january, nature, disabled, browser, browsers, searc hes, performed, enabled, tspdvalidate, validate |
ibm.com - rank der domain 508 (82 in CN)
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| zum Seitenanfang ↑ |
| ReadSeq |
| Web READSEQ Sequence Conversion Service |
| http://bimas.dcrt.nih.gov/molbio/readseq/ |
| Converts amino acid and nucleotide sequence data formats including FASTA, GenBank, Phylip and others . |
| |
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| readseq, conversion, sequence, format, version, sequence, output, phylip, codata, clustal, pretty, f latfeat, format, converted, formats, accepted, implementation, credits, options, formatting, phylip3 , remove, please, symbols, additional, readseq, program, automatically, determined, converts, functi on, service, specified, pearson, indiana, university, stanford, genbank, archive, developed, gilbert , information, maintained, dnastrider |
nih.gov - rank der domain 376 (174 in US)
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| zum Seitenanfang ↑ |
| YMF - DNA Motif Finding Program |
| YMF 3.0 - Software for Finding DNA Motifs |
| http://abstract.cs.washington.edu/~saurabh/YMFWeb/YMFInput.pl |
| Finds novel transcription factor binding sites by searching for over-represented (most significant m otifs) motifs in DNA sequences. |
| |
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| organism, created, maximum, server, sequences, upload, unmasked, length, faster, organisms, uploaded , example, format, sequences, processing, hosted, please, edumotifs, sessionnone, sinhas, problems, characters, should, encounter, sequence, mycobacterium, spacers, middle, degenerate, symbols, organi sm, select, motifs, finding, software, motifs, download, saccharomyces, jannaschii, tuberculosis, me thanococcus, influenzae, haemophilus, drosophila, melanogaster, create, grisea, escherichia, sapiens , arabidopsis, elegans |
washington.edu - rank der domain 3385 (1302 in US)
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| zum Seitenanfang ↑ |
| BIOBASE |
| Gene Regulation |
| http://www.gene-regulation.com/ |
| The focus of the GBF project "Molecular Bioinformatics of Gene Regulation" are regulatory genomic si gnals and regions that govern transcriptional control based on TRANSFAC - The Transcription Factor D atabase. It compiles data about gene regulatory DNA sequences and protein factors binding to and act ing through them. |
| |
| Genregulation, Gene regulation, Gene-regulation, Biobase, BIOBASE, Datenbank, Datenbanken, datenbank , datenbanken, Database, Databases, database, databases, Biotechnologie, biotechnologie, Biotechnolo gy, biotechnology, TRANSFAC, transfac, PathoDB, pathodb, CYTOMER, cytomer, SMARTDB, smartdb, TRANSPA TH, transpath gen, gene, Gen, Gene, genes, Genes |
| products, subscription, transfac, binding, regulation, password, website, versions, including, acces s, proteomics, expression, available, offered, promoting, biological, advantages, interpretation, da tabases, discuss, applications, player, personal, genomics, options, please, information, biobase, c ontact, member, rising, mutations, humanpsd, attribute, protein, complementary, proteome, plantpsd, transpath, collection, inherited, disease, comprehensive, professional, containing, factor, location s, subscribe, polymerase, predictions, release |
| (SLD : gene-regulation.com) |
|
| zum Seitenanfang ↑ |
| ProteinLounge |
| ProteinLounge: Redefining Biology |
| http://www.proteinlounge.com |
| Bioinformatics portal which integrates protein information and many databases and research tools use ful for researchers and students. Subscription based service. |
| Free interactive web-based databases, software and Bio-Social Networking to help the life-scientists . |
| pathway,protein,reagent,pathway builder,bioinformatics,phosphatase, kinase,Powerpoint,Life Science,s ystems bioinformatics,reagent,reagent sales |
| function, window, sender, getlink, omanager, center, radopen, eventargs, autopostback, proteinlounge , xmlhttp, owindow, university, radwindow, getradwindowmanager, otheruserid, getwindowbyname, webtop , conference, different, change, 2845678910, 2727282930123, smtwtfs, 2911121314151617, 3018192021222 324, style1, 321234567, 3125262728293031, settings, ondateclick, oncalendarviewchanging, select, cho ose, fortnightlast, weeklast, oneresetlast, return, radwindow, geturl, seturl, currently, radwindowb iotechrss, loginregistration, sterol, mitosis, frameelement, getradwindow, heidelberg, germany, canc er |
proteinlounge.com - rank der domain 169921 (66170 in US)
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| PlasMapper |
| PlasMapper |
| http://wishart.biology.ualberta.ca/PlasMapper/index.html |
| Online service to generate annotated plasmid maps up to 20 kbp. Outputs in PNG, JPG, SVG or SVGZ for mat. |
| |
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| restriction, sequence, strand, cutters, plasmapper, selectable, origin, category, unique, promoter, replication, terminator, reporter, marker, reading, unique, forwardreverse, regulatory, plasmid, dis play, plasmid, format, feature, select, labelsonoff, server, options, enzyme, thickness, medium, ple ase, annotate, feature2, feature3, feature1, feature6, feature5, feature4, defined, reverse, forward , features, codons, comment, funding, project, provided, suggestions, questions, contact, canadian |
ualberta.ca - rank der domain 17250 (187 in CA)
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| zum Seitenanfang ↑ |
| Bioverse |
| Bioverse |
| http://bioverse.compbio.washington.edu |
| Provides a framework for exploring the relationships among the molecular, genomic, proteomic, system s, and organismal worlds. |
| |
| |
| bioverse, genomic, sequence, framework, supported, relationships, browser, molecular, systems, struc ture, function, javascript, between, metabolites, proteins, levels, paradigm, information, bioverse, documentation, compbio, washington, conceptual, reading, detection, homology, sensitive, transfer, understand, continue, organisms, across, organismal, switch, enable, disabled, either, application, extensive, appears, computational, worlds, techniques, perform, analyses, sophisticated, proteomic, firefox, mozilla, object, oriented |
washington.edu - rank der domain 3385 (1302 in US)
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| zum Seitenanfang ↑ |
| Canadian Bioinformatics Help Desk |
| Canadian Bioinformatics Help Desk -- At the Nexus of Science and Service |
| http://gchelpdesk.ualberta.ca |
| We provide bioinformatics support, services, servers, and software to Canadian researchers. |
| |
| |
| science, service, canadian, bioinformatics |
ualberta.ca - rank der domain 17250 (187 in CA)
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| zum Seitenanfang ↑ |
| Mulan |
| Mulan :: MUltple sequence Local AligNment and visualization tool |
| http://mulan.dcode.org/ |
| Performs single-coverage local multiple DNA sequence alignments of finished and draft-quality genome sequences. It also provides with an option to predict transcription factor binding sites evolutiona rily conserved across multiple species. |
| |
| |
| sequence, sequences, multiple, reference, transcription, factor, finished, alignments, sequences, sp ecies, across, binding, secondary, conserved, changed, interconnected, identification, represented, performed, contigs, reference, orient, submitted, previously, return, diverged, request, development s, genomics, comparative, useful, sensitivity, increase, select, constructed, annotated, multitf, rv ista, array2bio, eshadow, quality, performs, visualization, alignment, multple, zpicture, ecrbase, b rowser, identifies, finished, alignment |
| (SLD : dcode.org) |
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| zum Seitenanfang ↑ |
| ProPred-I |
| MHC Class I Binding Peptide Prediction Server |
| http://www.imtech.res.in/raghava/propred1 |
| An online service for predicting MHC binding regions in antigens. It also offers the proteasomal and immunoproteasomal filters to improve the applicability of results. |
| The ProPred-I is a web server for predicting MHC class binding peptides. It predicts the promiscuous peptides |
| |
| threshold, sequence, propred, prediction, server, peptides, raghava, sequence, format, selection, di splay, promiscuous, tabular, binding, server, identifying, peptide, regions, proteasomal, binding, f ilter, immunoproteasome, cattle, proteasome, graphical, select, immunoproteasome, filters, proteasom e, results, peptides, scoring, highest, output, result, cleavage, filtered, revised, predicted, plea se, propred1, research, similar, bioinformatics, models, contact, introduction, matrices, promiscuou s, references, alleles |
| (SLD : res.in) |
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| zum Seitenanfang ↑ |
| ParAlign |
| ParAlign |
| http://www.paralign.org/ |
| Service using the ParAlign algorithm to compare genetic sequences. Apparently it is as fast as BLAST and as sensitive as Smith-Waterman. |
| Rapid and sensitive sequence similarity searches powered by parallel computing technology |
| homology, search, alignment, alignments, bioinformatics, biocomputing, sequence, searching, searches , sequences, smith-waterman, computational biology, paralign, similar, similarities, sequence databa ses, sequence alignments, SIMD, MMX, SSE, SSE2, AltiVec, VIS, MAX2, parallel, align, databases, nucl eotides, scan, find, est, genes, genetic, genome, proteins, enzymes, dna, cdna, compare, comparison, analysis, analyses, tools, molecules, molecular, biology, biological, rna, mrna, nucleic, amino aci ds, nucleic acids, peptides, rapid, fast, accurate, sensitive, swiss-prot, swissprot, embl, genbank, ddbj, homologues, homologs, homologous, accurate, sequencing, query, match |
| database, sequence, search, bioinformatics, blosum62, paralign, patent, neisseria, alignments, pepti des, nucleotide, nucleotide, refseq, sencel, scoring, nucleotides, genomic, arabidopsis, thaliana, t aurus, prokaryota, blosum80, sensitive, waterman, bacillus, blosum45, cereus, organisms, strands, ca enorhabditis, 100000, eukaryota, archaea, cerevisiae, saccharomyces, schizosaccharomyces, norvegicus , rattus, plasmodium, sativa, falciparum, pneumocystis, carinii, takifugu, updated, tuesday, identif ier, taxonomy, xenopus, rubripes, laevis |
| (SLD : paralign.org) |
|
| zum Seitenanfang ↑ |
| Systems Biology of Photosynthesis |
| Introduction - E-photosyntesis |
| http://www.e-photosynthesis.org |
| Open web platform for modeling and reverse engineering of photosynthetic dynamism. |
| |
| |
| introduction, photosynthesis, models, photosynthesis, silico, project, translated, consent, possible , authors, systems, biology, simulation, photosynthetic, formal, dynamics, language, experiments, co ntact, lazaar, holzwarthd, photosyntesis, bookabout, projects, supports, preparing, platform, presen t, series, springer, advances, respiration, selected |
| (SLD : e-photosynthesis.org) |
|
| zum Seitenanfang ↑ |
| ERGO |
| |
| http://ergo.integratedgenomics.com/ERGO/ |
| Online service integrating biological data from genomics, biochemistry, genetics and high-throughput expression profiling, to achieve a pattern-based analysis of genes and genomes. |
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| |
| document, bottom, objectid, elemwidth, return, lcount, olddomsmenu, images, supplement, domstyle, fi nddom, genomics, function, livepagewidth, visibility, elemheight, isdhtml, islayers, offsetwidth, la yers, findlivepagewidth, getelementbyid, hidden, available, plants, height, delayhidecontent, access , please, appoints, integrated, 2009integrated, mimetypes, navigator, weekday, family, monthname, of fsetheight, through, clientwidth, scrollleft, visible, innerwidth, scrolltop, window, netscape, brow ser, ldelay, withstyle, commercial, additions |
| (SLD : integratedgenomics.com) |
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| zum Seitenanfang ↑ |
| Carnac |
| CARNAC |
| http://bioinfo.lifl.fr/carnac/ |
| A free software tool for analysing the hypothetical secondary structure of a family of homologous RN A. |
| |
| RNA, ARN, mfold, fold, structure, prediction, secondary structure |
| structure, pkbaseurl, carnac, piwiktracker, secondary, bioinfo, document, information, sequences, rn afamily, homologous, carnac, perriquet, pubmed, locally, folding, carnac, common, touzet, examples, unescape, enablelinktracking, protocol, representation, produces, location, 3cscript, gettracker, ja vascript, script, trackpageview, viewers, possible, download, distributed, program, interface, avail ability, allows, display, viewer, freely, naview, naview, drawing, structures, several, backbone, fa milies, research, contact |
lifl.fr - rank der domain 310498 (4838 in EU)
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| zum Seitenanfang ↑ |
| PubCrawler |
| PubCrawler Web Service |
| http://pubcrawler.gen.tcd.ie/ |
| An online service for periodically performing predefined searches at NCBI, reporting new results by email or on the web. |
| PubCrawler - a free Update AlertingService for PubMed and GenBank (Home Page) |
| PubCrawler, Home Page, Update, Alert,Alerting Service, PubMed, GenBank, Journal, Article, Free |
| pubcrawler, username, service, disclaimer, provided, password, genbank, medline, databases, button, border, decoration, library, queries, national, warranty, useful, absolutely, public, hosted, develo ped, copyright, genetics, department, medicine, ireland, dublin, trinity, college, please, question, remarks, pubcrawlerremovecapshelp, please, affiliation, information, modified, copyrights, disclaim ers, otherwise, updates, pubmed, alerting, 313063, height, current, informed, scientists, keeping, c ecfce, download |
tcd.ie - rank der domain 34522 (50 in IE)
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|
| zum Seitenanfang ↑ |
| Advanced Genetics Wizard |
| Advanced Genetics Wizard |
| http://www.geneticswizard.com |
| Online program that calculates the distribution of offspring genotypes from dominant, codominant and recessive gene crosses, for up to 6 genes. |
| |
| |
| wizard, advanced, genetics |
| (SLD : geneticswizard.com) |
|
| zum Seitenanfang ↑ |
| iHOP |
| iHOP - Information Hyperlinked over Proteins |
| http://www.ihop-net.org/UniPub/iHOP/ |
| Uses the network of genes and proteins as a natural way of accessing the millions of biomedical abst racts in PubMed. |
| iHOP - Information Hyperlinked over Proteins. iHOP provides the network of genes and proteins as a n atural way of accessing the millions of abstracts in PubMed. By employing genes and proteins as hype rlinks between sentences and abstracts, the information in PubMed becomes bound together into one na vigable resource. A Gene Network for Navigating the Literature, Nature Genetics 36, 664 (2004). www. ihop-net.org/UniPub/iHOP/ |
| iHOP ihop gene genes protein proteins network networks information literature pubmed medline text na vigation biology medicine drug drugs hyperlink hyperlinking navigating mining textmining www.ihop-ne t.org/UniPub/iHOP/ |
| window, return, document, location, position, unipub, search, organism, function, phrase, getelement byid, horizontal, vertical, keycode, parameter, downloads, hoffmann, ymousepos, xmousepos, textbrows er, please, display, valert, abstract, organism, status, active, logged, symbol, official, number, s erver, academic, domain, created, robert, charge, indexof, elements, without, developed, things, exi sting, resources, central, according, popituptype, javascript, possible, depend, redirectoldbrowser |
ihop-net.org - rank der domain 735126 (297852 in US)
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| zum Seitenanfang ↑ |
| WebACT |
| |
| http://www.webact.org |
| A database of sequence comparisons between all publicly available prokaryotic genome sequences, allo wing the on-line visualisation of comparisons between up to five genomic sequences, using the Artemi s Comparison Tool. User can perform their comparisons on their own data. |
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| (SLD : webact.org) |
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| zum Seitenanfang ↑ |
| TFM Explorer |
| |
| http://bioinfo.lifl.fr/TFM-Explorer/ |
| Scans sequences for potential Transcription Factor binding sites using Patser and TRANSFAC. |
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lifl.fr - rank der domain 310498 (4838 in EU)
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| zum Seitenanfang ↑ |
| Gene and Protein Synonyms DataBase |
| BioMinT |
| http://biomint.pharmadm.com |
| Free service for retrieving all synonyms for a given gene or protein name. |
| |
| BioMinT, biomedical, text mining, natural language processing, NLP, biology, gene, protein, GPSDB, s ynonym, PharmaDM, BLASTP, Terri Attwood, Paul Bradley, Walter Daelemans, Kurt De Grave, Luc Dehaspe, Frederik Durant, Melanie Hilario, Jee-Hyub Kim, Frederik Lefever, Jo Meyhi, Alex Mitchell, Johann P etrak, Violaine Pillet, Alexander K. Seewald, Ioannis Selimas, Kristof Van Belleghem, Andre Vandecan delaere, Anne-Lise Veuthey, Marc Zehnder |
| biomint, edition, javascript, browser, collection, protein, database, literature, targetted, prototy pe, extraction, online, protein, organized, biomedical, synonym, databases, source, correctly, expas y, results, better, unfortunately, retrieval, update, species, updated, service, contact, caution, s upport, consortium, general, account, create, toolbox, blastp, application, version, application, we lcome, please, properly, enable, javascript, supports, information |
| (SLD : pharmadm.com) |
|
| zum Seitenanfang ↑ |
| BioModels Database |
| BioModels Database |
| http://www.ebi.ac.uk/biomodels/ |
| Resource for storing, searching and retrieving published mathematical models of biological interests . Models present in BioModels Database are annotated and linked to relevant data resources, such as publications, databases of compounds and pathways, controlled vocabularies, etc. |
| |
| BioModels Database, biomodels, Nicolas Le Novere, Chen Li, SBML, bioinformatics, genomics, computati onal neurobiology, neuroinformatics, systems biology |
| database, models, biomodels, frames, models, inline, search, browse, annotated, submit, relevant, re sources, linked, biological, interests, present, publications, online, simulate, curated, curated, m athematical, pathways, compounds, databases, controlled, vocabularies, advanced, resource, currently , support, configured, display, content, browser, contents, header, relative, position, contentsarea , viewed, published, annotated, allows, retrieve, biologists, source, actual, published |
| (SLD : ac.uk) |
|
| zum Seitenanfang ↑ |
| InstaSeq |
| InstaSeq - A Google powered bioinformatics search tool |
| http://bioinformatics.georgetown.edu/InstaSeq.htm |
| Google-based search engine for DNA, RNA or Protein sequences. |
| A Google powered bioinformatics search tool to mine the web for biological sequences and related rec ords |
| Google, Search, Bioinformatics, Biotechnology, Genomics, Proteomics, Genome, Proteome, Diagnostics, DNA, RNA, Protein, web, sequence, information, pharma, cloning, vectors, Bioinformatics, Chemiinfor matics, pharamaceutical, computational biology, instrumentation, spectroscopy, assays, kits, glucose testing, transfection, chemotherapy, |
| searchstring, substring, length, replaceall, document, oldstr, findstr, srchndx, newstr, function, r epstr, indexof, string, georgetown, instaseq, selected, bookmark, requested, instaseq, replace, stri ngs, version, altered, searching, unaltered, whatever, instead, putting, javascript, return, instead , location, powered, problems, sequerome, characters, sequence, collapse, spaces, escape, action, ch ecked, pacific, firehzrd, google, unwebify, search, bioinformatics, parseseq, sitesearch, instances |
georgetown.edu - rank der domain 16248 (6023 in US)
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| zum Seitenanfang ↑ |
| Gene Expression Data Analysis |
| University of Pittsburgh Bioinformatics Software and Web Tools Collection |
| http://bioinformatics.upmc.edu/GE2/GEDA.html |
| Normalization tests for differentially expressed genes, clustering, bootstrapping, leave-one-out val idation, cross-fold validation. |
| |
| |
| available, bioinformatics, analysis, expression, university, pittsburgh, simulator, evolution, seque nce, modeling, clinical, decision, software, collection, reverse, complement, reading, finder, simpl e, nucleotide, alignment, longest, updated, robert, problems, provided, genomics, report, laboratori es, proteomics, service, server, molecular, phylogenetics, evolution, evolutionary, expression, geno mics, projects, result, research, efforts, student, involved, researchers, analysis, transversion, t ransition, purpose, genome, phylogenetics |
upmc.edu - rank der domain 266299 (104665 in US)
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| zum Seitenanfang ↑ |
| Center for Biological Sequence Analysis |
| |
| http://www.cbs.dtu.dk/services/ |
| Offers more than 30 online services for DNA and protein bioinformatics analysis. |
| |
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dtu.dk - rank der domain 72953 (163 in DK)
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| zum Seitenanfang ↑ |
| PANDORA |
| Pandora |
| http://www.pandora.cs.huji.ac.il |
| Protein ANnotation Diagram ORiented Analysis service that extracts biological information from user supplied sequences. |
| PANDORA offers biological annotation-based analysis of protein sets. Integration of annotation sourc es and intersection-inclusion DAG allow meaningful biological interpretation. keywords: proteins bio informatics annotations proteomics computational molecular biology |
| pandora, bioinformatics, biology, computational molecular biology,protein annotation, protein, prote ins, protein sets, protein groups, annotations, keywords, dag, grapa, swissprot, protein properties, protonet, biological analysis, biological interpretation, proteomics, genomics, integration, protei n families, protein clusters, proteomic research, experimental proteomics, computational proteomics, annotation analysis, quantitative proteomics, proteomics tool, annotation, keyword, directed acycli c graph, protein classification, functional genomics, intersection-inclusion |
| function, document, addevent, myverticalslide1, proteins, getelementbyid, pandora, myverticalslide2, myform, vertical, mytable, resultstable, myformverticalslide, loading, window, toggle, myverticalsl ide22, status, kwsetvars, response, pagetracker, toggle1, seqtoggle, jerusalem, sortabletable, oncli ck, uniprotkb, submit, complete, hebrew, university, gajshost, children, hasclass, return, toggle2sh ow, request, checked, results, pandora, retrieval, 1129585, mapping, conversion, mapping, biomart, e nsembl, peptides, trackpageview, sequence, including |
| (SLD : ac.il) |
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| zum Seitenanfang ↑ |
| JustBio: Online Tool Set |
| |
| http://www.justbio.com/tools.php |
| A Suite of Online tools for analysis of DNA/RNA, Proteins, and Arrays. |
| |
| |
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justbio.com - rank der domain 984089 (30886 in FR)
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| zum Seitenanfang ↑ |
| My Genomics Resource Centre |
| Welcome to Malaysian Genomics Resource Centre |
| http://www.mgrc.com.my |
| A Malaysian Genomics toolset for high-throughput analysis of biological data. Must register to use. |
| Offers free online bioinformatics applications and resources. |
| bioinformatics,genomics,proteomics,computational biology,second generation sequencing,biotechnology resource |
| theurl, background, images, indexof, circle, orange, probes, document, function, filler, substring, location, window, decoration, ffffff, decoration, getelementbyid, gothic, family, franklin, linkblue , updated, genomics, resource, malaysian, genomics, centre, buttonshow, repeat, 20release, unescape, button, opacity, absolute, sequenced, genomeslast, eukaryotic, subscribe, advanced, genomes, genera te, phylogenetic, bacterial, compare, updates, analysis, streak, filter, introns, motifs, proteins |
| (SLD : com.my) |
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| zum Seitenanfang ↑ |
| Information Génomique et Structurale (CNRS) |
| |
| http://igs-server.cnrs-mrs.fr |
| Online services including T-Coffee, El-Nemo, Casper and FeeBack. |
| |
| IGS |
| |
cnrs-mrs.fr - rank der domain 947026 (35334 in FR)
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| zum Seitenanfang ↑ |
| Ligand-Gated Ion Channel Database |
| Ligand-Gated Ion Channel Database |
| http://www.ebi.ac.uk/compneur-srv/LGICdb/LGICdb.php |
| LGICdb is a curated repository of genes coding for subunits of Ligand-Gated Ion Channels. |
| European Bioinformatics Institute - Computational Neurobiology |
| Nicolas Le Novere, EBI, EMBL, bioinformatics, software, databases, genomics, computational neurobiol ogy, neuroinformatics, systems biology |
| receptors, database, subunits, database, lgicdb, search, ligand, channels, transmembrane, superfamil y, channel, institute, sequence, channel, activated, glutamate, superfamilies, homologous, segments, subunits, provided, pasteur, nicolas, different, receptor, glycine, receptor, anionic, accession, h istamine, experience, keywords, structures, helped, training, alignments, search, people, following, sequences, similarity, kainate, studies, curation, phylogenetic, cationic, minimum, nicotinic, deve loped, searches, program |
| (SLD : ac.uk) |
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| zum Seitenanfang ↑ |
| Functional Human Gene Network |
| www.genenetwork.nl |
| http://www.genenetwork.nl |
| Consolidates evidence for gene-gene interactions from HPRD, BIND, Reactome, KEGG, GO, microarray co- expression and Y2H experiments. Beautiful site design. |
| |
| |
| frames, genenetwork, browser, support |
| (SLD : genenetwork.nl) |
|
| zum Seitenanfang ↑ |
| Bacterial Identification |
| HTML redirection |
| http://pbil.univ-lyon1.fr/bibi/query.php |
| Service for the identification of bacteria and fungi sequences by sequence alignment. |
| |
| |
| redirection |
univ-lyon1.fr - rank der domain 41670 (1355 in FR)
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| zum Seitenanfang ↑ |
| QGRS Mapper |
| RCBG-GRSDB |
| http://bioinformatics.ramapo.edu/QGRS/ |
| Generates information on composition and distribution of putative Quadruplex forming G-Rich Sequence s (QGRS) in nucleotide sequences and NCBI genes. |
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| |
| |
ramapo.edu - rank der domain 230753 (90284 in US)
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| zum Seitenanfang ↑ |
| BioGRID |
| BioGRID | Database of Protein and Genetic Interactions |
| http://www.thebiogrid.org/ |
| Database of genetic and physical interactions. It contains interaction data from many sources, inclu ding several genome/proteome-wide studies, the MIPS database, and BIND. |
| BioGRID Is An Online Interaction Respository With Data Compiled Through Comprehensive Curation Effor ts. Our Current Index Contains 345,620 Raw Protein And Genetic Interactions From Major Model Organis m Species. |
| biogrid, protein interactions, genetic interactions, complexes, downloads, saccharomyces cerevisiae, homo sapiens, chemical interactions, yeast, biological |
| biogrid, interactions, download, interaction, curated, search, interactions, results, dataset, poste d, updated, genetic, available, additional, biogridadmin, reported, provides, thebiogrid, physical, genetic, curation, include, incorrectly, herpesvirus, missed, format, sending, redundant, updates, i nteraction, formats, statistics, downloads, please, release, version, additions, number, physical, m onthly, publication, interface, directly, details, release, search, pagetracker, datasets, contribut e, import, filtering |
thebiogrid.org - rank der domain 908342 (15735 in CA)
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|
| zum Seitenanfang ↑ |
| LongTrace DNA Sequencing Service |
| LongTrace DNA Sequencing |
| https://www.nucleics.com/longtrace/ |
| A commercial service for improving the read length and quality of ABI 3730, 3130 and 3100 DNA sequen cing traces. Works via reprocessing of the raw peak data before re-base calling. A free trial is pro vided. |
| The LongTrace DNA sequencing system for obtaining longer reads with fewer errors from the ABI 3730, 3100, 3130 & 3730xl DNA sequencers730, 3100, 3130 & 3730xl DNA sequencers |
| |
| longtrace, traces, system, processing, sequencing, please, service, contact, document, process, purc hase, length, processings, privacy, quality, policy, charge, version, improvement, improved, account , sequencing, provided, standing, register, overview, nucleics, questions, errors, without, support, upload, countertrace, processed, discounts, customers, permission, prices, software, analysis, info rmation, register, longtrace, reduce, facilities, significant, however, exactly, limited, difference , 3730xl |
| (SLD : ww.https:) |
|
| zum Seitenanfang ↑ |
| Zinc Finger Tools |
| Zinc Finger Tools |
| http://www.scripps.edu/mb/barbas/zfdesign/zfdesignhome.php |
| Helps users design zinc finger transcription factors. |
| Zinc Finger Tools provides tools for selecting zinc finger
protein (ZFP) target sites and for desi gning the proteins that will target them. These ZFPs can be fused with effector
domains that confe r transcriptional activation or repression activity. |
| zinc finger tools,zincfingertools,ZF Tools,zinc finger,protein,zinc,designer zinc finger,engineered zinc finger,
protein design,transcription factor,carlos,barbas,carlos barbas,mandell,jeff mandell,z incfingertools.org,zincfingertools.com,
zincfingertools.net,Cys2His2 zinc finger,C2H2 zinc finger,C 2H2 ZF,ZF,ZFN,ZFC,beta sheet,alpha helix,deconvolution,
target site prediction,artificial,effector domain,promoter,DNA |
| search, password, design, separatedtarget, sequence, contiguous, changeyour, search, sequence, scann ed, triplets, target, forgot, zincfingertools, finger, overview, available, feedback, citations, syn thesize, triplets, effector, domains, nuclease, register |
scripps.edu - rank der domain 79048 (30122 in US)
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| zum Seitenanfang ↑ |
| Transcription Element Search Software (TESS) |
| TESS : Transcription Element Search System |
| http://www.cbil.upenn.edu/cgi-bin/tess/tess |
| Very helpful software for locating and displaying transcription factor binding sites within DNA sequ ences - from the Univ. of Penn. |
| |
| |
| search, search, results, transfac, transcription, sequence, feature, element, searches, jaspar, incl ude, matrices, binding, system, sequences, consensus, number, protocols, function, current, paramete rs, searches, report, technical, factor, report, please, weight, window, display, updated, jonathan, bioinformatics, defined, strings, querying, matrices, database, earlier, commercial, status, welcom e, binding, section, technical, recall, submit, genome, server, genomes, information |
upenn.edu - rank der domain 2882 (1120 in US)
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| zum Seitenanfang ↑ |
| Splice Center |
| SpliceCenter Overview |
| http://www.tigerteamconsulting.com/SpliceCenter/SpliceOverview.jsp |
| Suite of user-friendly tools that evaluate the impact of gene splicing variation on specific molecul ar biology techniques. |
| |
| |
| variants, splice, target, targeted, microarray, primer, peptide, location, splicecenter, probes, exp ression, displays, within, throughput, overview, primers, expression, position, peptide, results, sp ecific, sequences, sequence, identifies, identification, display, tabdropdown, tabular, performs, ta bular, shrnas, sirnas, process, evaluates, numbers, reports, report, important, details, confirm, me asuring, provide, protein, bioinformatics, values, displayed, insilico, comments, questions, include s, graphic |
| (SLD : tigerteamconsulting.com) |
|
| zum Seitenanfang ↑ |
| Splice Miner |
| SpliceMiner |
| http://www.tigerteamconsulting.com/SpliceMiner/intro.jsp |
| Tool for querying Evidence Viewer Database (EVDB), a comprehensive, non-redundant collection of spli ce variant data for human genes. |
| EVDB is a non-redundant database of human gene spliceforms designed to support high throughput reque sts. It is based primarily on data from NCBI's Evidence Viewer |
| SpliceMiner, EVDB, alternative splicing database, splice variants, intron, exon, evidence viewer |
| spliceminer, evidence, viewer, splice, queries, database, sequence, genomic, result, process, multip le, bioinformatics, variants, variant, support, supports, redundant, throughput, symbol, genomics, p rojects, general, research, applicability, design, distinguishing, feature, coordinate, coordinates, pipelines, analysis, intended, microarray, department, computational, biology, university, george, notice, disclaimer, development, continuing, maintained, genomics, jointly, developed, originally, q ueryable, entrez, constructed, obtained |
| (SLD : tigerteamconsulting.com) |
|
| zum Seitenanfang ↑ |
| GenOuest Bioinformatics Platform |
| genouest.org |
| http://genouest.org |
| Provides a complete set of bioinformatics tools and public databanks updated daily, and a range of l inks to seminars, training courses and platform news. |
| |
| |
| genoweb3, location, genouest, original |
| (SLD : genouest.org) |
|
| zum Seitenanfang ↑ |
| Mobyle |
| Mobyle portal |
| http://mobyle.pasteur.fr |
| Framework and web portal specifically designed for the integration of bioinformatics software and da tabanks. Provides a tutorial and an interactive guided tour. |
| Mobyle is a framework and web portal specifically aimed at the integration of bioinformatics softwar e and databanks. |
| |
| portal, mobyle |
pasteur.fr - rank der domain 242901 (8704 in FR)
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|
| zum Seitenanfang ↑ |
| Your Lab Data |
| Your Lab Data - Free LIMS and ELN |
| http://www.yourlabdata.com/ |
| A free web-based Laboratory Information Management System (LIMS), aimed at a typical small molecular biology laboratory allowing members to have their own private forum, events, Electronic Lab Noteboo k (ELN) and a LIMS area. |
| Your Lab Data is a free web-based LIMS (Laboratory Information Management System) and ELN (Electroni c Lab Notebook), aimed at a typical small molecular biology laboratory. |
| LIMS, ELN, Free, Laboratory Information Management System |
| website, protein, structure, maintain, articles, pagetracker, oligos, primers, expression, glycerol, chemicals, association, nuclear, variation, started, muscle, differentiation, growth, regulator, do cument, gajshost, carotenoid, complex, drosophila, molecular, mediated, negative, analysis, subseque nt, growth, xenografts, pex11p, microtubule, therapy, journal, ricerche, popular, stimulus, spunti, imaging, bioluminescence, intracranial, orthotopic, transplantation, response, slices, protein, depe ndent, activation, structure, plasma |
| (SLD : yourlabdata.com) |
|
| zum Seitenanfang ↑ |
| Silva: Comprehensive Ribosomal RNA Databases |
| Silva |
| http://www.arb-silva.de |
| The provided databases comprise SSU and LSU sequences of all three domains. Online search and alignm ent tools are available and the results can be exported in ARB and FASTA format. |
| The SILVA database project provides comprehensive, quality checked and regularly updated databases o f aligned small (16S / 18S, SSU) and large subunit (23S / 28S, LSU) ribosomal RNA (rRNA) sequences f or all three domains of life (Bacteria, Archaea and Eukarya). |
| SILVA,ARB,16S,23S,rRNA,SSU,LSU,ribosomal,RNA,database,alignment,bacteria,eukarya,archaea,18S,28S,sop pi,living tree,miens,contextual data,taxonomy,sytematics |
| package, software, ribosomal, aligned, portal, quality, checked, sequence, integrated, databases, lu dwig, information, project, comprehensive, filesarb, germany, partner, munich, homebrowsersearchsear chgeoblastontogratorlistalignerdownloadmy, technical, started, university, filesarchivedocumentation backgroundrelease, wolfgang, ecological, knittel, peplies, citationpruesse, feeling, genomix, marine , improved, research, handling, subunit, domains, sequences, designlabelstestingsynthesisshopcontact addressteam, database, silvawelcome, academic, updated, datasets, regularly, provides, bacteria, sup porttrainingprojectsoverviewssu, graphically, represents, herearbthe, oriented |
| (SLD : arb-silva.de) |
|
| zum Seitenanfang ↑ |
| DBD: Transcription Factor Prediction Database |
| |
| http://dbd.mrc-lmb.cam.ac.uk |
| DBD is a database of predicted transcription factors in completely sequenced genomes. The predicted transcription factors all contain assignments to sequence specific DNA-binding domain families. |
| |
| |
| |
| (SLD : ac.uk) |
|
| zum Seitenanfang ↑ |
| Docking Server |
| Molecular Docking Server - Ligand Protein Docking & Molecular Modeling |
| http://www.dockingserver.com |
| Provides an internet service that calculates the site, geometry and energy of small molecules intera cting with proteins. |
| Molecular Docking server helps you setup ligand & protein for molecular modeling & ligand do cking using high-throughput virtual screening. It uses Autodock & Mopac for docking calculations . |
| Molecular Docking, Molecular Modeling, Ligand Docking, Ligand Protein, Virtual Screening, Autodock, Mopac |
| docking, slideshow, ligand, docking, protein, dockingserver, calculation, server, virtua, chemical, calculations, molecular, ligands, parameters, molecular, biochemistry, pagetracker, methods, footer, automatically, downloaded, directly, proteins, uploaded, computer, throughput, marvin, carried, dat abase, results, pricing, accuracy, photos, accurate, charge, tinyslideshow, optimization, single, li braries, function, chemistry, structures, preparation, number, generated, different, integrates, nee ded, software, password, experimental |
dockingserver.com - rank der domain 998673 (3297 in HU)
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|
| zum Seitenanfang ↑ |
| GenePattern |
| GenePattern |
| http://www.genepattern.org |
| This platform provides over 100 methods for the analysis and visualization of gene expression, copy number, proteomic and other data. It enables biologists to add new analyses and create workflows tha t can be shared, edited and published. |
| |
| |
| genepattern, analysis, institute, provides, analysis, server, available, module, analyses, access, p rocessing, interface, creation, allows, research, proteomics, modules, expression, analyses, common, released, mesirov, silico, reproducible, enable, pipelines, research, reproducible, pagetracker, do wnload, tutorials, document, publications, gajshost, national, minutes, developed, competition, abba tiello, clinical, gettracker, public, practices, spectrometry, script, monitoring, evaluates, multip le, reaction, chemistry, policy |
| (SLD : genepattern.org) |
|
| zum Seitenanfang ↑ |
| UEA Plant sRNA Toolkit |
| UEA sRNA tools |
| http://srna-tools.cmp.uea.ac.uk |
| A suite of tools for the analysis of sRNA datasets from high-throughput sequencing experiments. |
| |
| |
| toolkit, please, biology, computational, select, version, contact, existing, requests, column, webma ster, animals, navigation, update, ueafor, bookmarks, feedback, animal, research, welcome, database, animals, plants, databases, silodb, toolkit, provides, versions, proceed, throughput, access, softw are, analysis, plants |
| (SLD : ac.uk) |
|
| zum Seitenanfang ↑ |
| PathCase: Pathways Database System |
| PathCase-KEGG |
| http://nashua.case.edu/pathwaysweb/ |
| An integrated software system for storing, managing, analyzing, and querying metabolic pathways at g enetic, molecular, biochemical and organism levels. |
| |
| |
| pathways, pathcase, interface, pathcasesb, layouts, available, pathcasemaw, released, curated, versi on, allows, queries, advanced, please, improved, visualize, visualizations, public, recent, updated, pathway, keyword, release, versions, history, version, access, various, september, functional, anal ysis, integrated, additional, please, several, function, search, databases, feature, search, publicl y, visualized, running, metabolite, supports, querying, browser, database, select, visualization, re searchers |
| (SLD : case.edu) |
|
| zum Seitenanfang ↑ |
| gp2fasta |
| gp2fasta |
| http://gp2fasta.ovh.org/ |
| Converts gp files from NCBI GenPept format to fasta. Its main purpose is to create fasta files with short, but still accurate headers for sequence. |
| |
| |
| gp2fasta |
| (SLD : ovh.org) |
|
| zum Seitenanfang ↑ |
| BiNCO-wiki |
| BiNCo-wiki |
| http://pgrc-35.ipk-gatersleben.de/pls/htmldb_pgrc/f?p=160:1:3068865960025140 |
| Provides a collection of information on data sources for biological networks, file formats that save biological networks and software to analyze the information of these sources. |
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| site2007, entries, sources, information, biological, access, academic, 07free, display, entries, net works, welcome, disabled, notice, important, expected, getelementbyid, document, filebiogrid, impres sum, repository, general, gatersleben, 07unknownviewdatabase, nobodyen, feedbackview, 11open, entrie ssearch, navigation, sourceviewfile, filescsv, formatcsv, interaction, connections, genomeskeggweb, encyclopedia, useviewsoftwareflatpackflatpackweb, copyright, number, 04open, filekyoto, information, datasetsbiogridweb, source, 64number, useviewdatabase, entriesloginregisterhelp, 85number, software , browser, because |
ipk-gatersleben.de - rank der domain 996366 (71815 in DE)
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| Broad Institute: Software |
| Software | Broad Institute of MIT and Harvard |
| http://www.broad.mit.edu/science/software/software |
| Scientists at the Broad Institute have developed a range of software tools for the analysis of incre asingly large genome-related datasets. These are openly available to the scientific community. |
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| import, analysis, activemenu, modules, genome, software, sequence, genomic, cellprofiler, frontpage, available, genome, viewer, software, designed, themes, jstools, broad2, program, genepattern, insti tute, sequencing, integrative, sequences, genomics, calendar, eigenstrat, algorithms, between, affym etrix, throughput, analysis, genetic, public, ultrasome, detecting, allpaths, selection, contact, tr eechopper, linkage, expression, results, screening, spines, tagger, newsroom, analyst, amoscmp16spip eline, genehunter, package |
mit.edu - rank der domain 1198 (505 in US)
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| QualTrace DNA Sequencing |
| QualTrace 2 QC Software Online |
| http://www.nucleics.com/qualtrace-dna-sequencing-demo/ |
| A free online version of the QualTrace DNA sequencing software for quality control analysis of ABI 3 730 and 3730xl traces files. |
| A free online version of the QualTrace DNA sequencing software for quality control analysis of ABI 3 730 & 3730xl DNA sequencers |
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| qualtrace, sequencing, software, version, document, please, online, standalone, support, available, contact, services, sequencing, sequencers, sequence, software, online, traces, service, basecaller, reagents, modified, nucleics, peaktrace, reagent, resources, single, purchase, purchase, sequencer, questions, longtrace, contact, support, allows, services, products, analysis, control, quality, long trace, 3730xl, upload, graphical, friendly, information, manual, command, windows, program |
| (SLD : nucleics.com) |
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| Informatics Tools in PubMed |
| PubMed > list |
| http://into.kobic.re.kr |
| The PubMed search system provides access to the MEDLINE and PREMEDLINE databases. |
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| PubMed KOBIC |
| bioinformatics, united, oxford, england, comput, genomics, states, inform, methods, bioinform, biome d, journal, neurosci, protein, genome, proteomics, pubmed, analysis, country, protein, pagetracker, france, kingdom, analysis, germany, canada, visualization, pharmacogenomics, physiol, belgium, austr ia, stochastic, engineering, keywords, iastate, software, alignment, molecular, biology, svdetect, w arwick, measurements, netherlands, bioinformatics, results, integr, reverse, genome, russian, federa tion, finland |
| (SLD : re.kr) |
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| Gene2MeSH |
| Gene2MeSH - Gene Annotation with MeSH Terms |
| http://gene2mesh.ncibi.org/ |
| Web application that searches gene symbols or MeSH terms and displays resulting pairs of genes and M eSH terms that match the search term. |
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| gene2mesh, search, search, results, document, function, callback, select, showmodedisp, visibility, display, hidden, modedisp, modeviz, checked, advcol, symbols, setvalue, replace, symbol, escapehtml, activexobject, xmlhttprequest, download, substances, information, articles, interface, programmatic , criteria, displaytagservice, pagetracker, gajshost, showmodeviz, javascript, organism, specific, l ookup, pubmed, updatetable, updatelinks, quotes, taxonomy, tracker, related, enclose, biological, re strict, history, phrases, created |
| (SLD : ncibi.org) |
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| Metab2MeSH |
| Metab2MeSH - Biological Substance Annotation with MeSH Terms |
| http://metab2mesh.ncibi.org/ |
| Web application that searches biological substances or MeSH terms and displays resulting pairs of su bstances and MeSH terms that match the search term. |
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| metab2mesh, search, function, document, search, substances, callback, showmodedisp, modedisp, modevi z, checked, gajshost, results, biological, substance, download, xmlhttprequest, activexobject, displ aytagservice, updatelinks, updatetable, criteria, escapehtml, substance, setvalue, replace, pagetrac ker, showmodeviz, javascript, whether, select, unescape, searching, significantly, associated, 11509 16, protocol, trackpageview, pubmed, lowest, significance, highest, abstracts, ordered, 3cscript, sc ript, google, lookup, delimited, previous, support |
| (SLD : ncibi.org) |
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| Michigan Molecular Interactions |
| MiMI Web - Main Search |
| http://mimi.ncibi.org/MimiWeb/main-page.jsp |
| MiMi Web provides an interface to a NCIBI data repository for conducting systems biology analyses. T his repository includes the MiMI database, PubMed resources updated nightly, and text mined from bio medical research sources. |
| MiMI: (Michigan Molecular Interactions) is part of the NIH funded National Center for Integrative B iomedical Informatics (NCIBI). MiMI provides access to the knowledge and data from several curated p rotein interaction databases. MiMI merges these data with deep integration into a single database so that you can query and analyze the information in one. MiMi also provides you with links to the dat a sources at your point of need. |
| MIMI, molecule, interaction, gene, pathway, pudmed, NCIBI, National Center for Integrative Biomedica l Informatics, NCBC, ncibi, u54da021519, U54-DA021519, integration, UM, University of Michigan, CCMB , NIH, bioinformatics, computational biology, mimi, NLP, Brian Athey, Jagadish, Omenn, States |
| function, document, search, luceneform, herpesvirus, escapehtml, search, setvalue, adenovirus, count webservice, displaytagservice, updatelinks, papillomavirus, subtilis, hepatitis, pseudomonas, vulgar e, strain, callback, salmonella, escherichia, tumefaciens, vaccinia, hordeum, schizosaccharomyces, b acillus, oleracea, agrobacterium, pylori, helicobacter, typhimurium, criteria, gene2mesh, tuberculos is, update2, pagetracker, sativa, showwelcome, elongatus, synechococcus, searchterm, mycobacterium, caulobacter, aeruginosa, solanum, gajshost, enterobacteria, flexneri, pyogenes, sulfolobus, lycopers icum |
| (SLD : ncibi.org) |
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| Proteomics Services & Protein Identification |
| www.bioproximity.com |
| PROTEOMICS SERVICES: Bioproximity offers a wide range of proteome research customized to the needs o f our clients: protein identification, mass spectrometry service, gel spot ID, etc. |
| PROTEOMICS SERVICES: Bioproximity offers a wide range of proteome research customized to the needs o f our clients: protein identification, mass spectrometry service, gel spot ID, etc. |
| proteome, proteomic services, mass spectrometry, chromatography, electrophoresis, western blot, elis a, 2-d gel, 2-d page, sds-page, proteome cluster, cloud computing, high performance computing, bioma rker, preclinical trial, host cell proteins, hcp, chinese hamster ovary, CHO, bioprocessing, immunop recipitation, co-immunoprecipitation, affinity mass spectrometry, therapeutic protein, biologic prot ein, biosimilar, disulfide scrambling, silac, gelc-ms, oge ief |
| bioproximity, lvs35e, import, modules, protein, themes, system, styles, proteome, profiling, ninesix ty, proteomic, services, framework, profiling, proteomic, characterization, twitter, characterizatio n, cluster, bioproximity, spectrometry, informatics, proteomics, proteomics, search, sample, applica tions, preparation, quality, services, analysis, protein, simplenews, identification, global, ionsou rce, colorbox, ctools, search, latest, service, newsletter, offerings, testmonials, expectations, ex pertise, results, consultation, pricing, transparent |
| (SLD : bioproximity.com) |
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